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User 'Jin-Dong Kim'

Projects

NameTDescription# Ann.Updated atStatus
1-10 / 35 show all
BioASQ-samplecollection of PubMed articles which appear in the BioASQ sample data set.02015-10-13Testing
DisGeNETDisease-Gene association annotation.3.12 M2016-01-28Beta
CHEMDNER-training-testThe training subset of the CHEMDNER corpus29.4 K2015-03-23Testing
pubtator-sampleSample annotation of PubTator produced by Zhiyong Lu et al.282016-01-19Testing
CRAFT-treebankPenn Treebank markup for each sentence of the Colorado Richly Annotated Full Text Corpus (CRAFT).844 K2015-11-19Beta
pubmed-enju-pasAnnotating PubMed abstracts for predicate-argument structure (PAS). Enju 2.4.2 is used to automatically compute PAS.736 K2016-01-31Developing
GlycoBiology-FMAFMA ontology-based annotation to GlycoBiology abstracts96.3 K2016-01-31Testing
metamap-sampleSample annotation of MetaMep, produced by Aronson, et al. An overview of MetaMap: historical perspective and recent advances, JAMIA 201010.9 K2016-12-19Testing
uniprot-mouseProtein annotation based on UniProt11.5 K2016-04-27Developing
uniprot-humanUniprot proteins for human21.9 K2016-04-25Testing

Automatic annotators

NameDescription
1-4 / 4
TextSentencersentence segmentation
EnjuParserEnju HPSG Parser developed by University of Tokyo.
PD-UBERON-AE-BIt annotates for anatomical entities, based on the UBERON-AE dictionary on PubDictionaries. It used the default threshold, 0.85. It uses the batch mode annotation, and may be used for annotation to a large amount of documents.
PD-UBERON-AEIt annotates for anatomical entities, based on the UBERON-AE dictionary on PubDictionaries. Threshold is set to 0.85.

Editors

NameDescription
1-1 / 1
TextAEIt is a "Text Annotation Editor" developed by DBCLS. It is developed as a model implementation of PubAnnotation-interoperable viewer/editor.